u/Educational-Today482

I am working on couple of plant WGS data sequenced from P2 solo machine. I searched for a proper pipeline to perform variant analysis on the data. While I found a lot of articles for human data, I couldn't find any for plants. I am specifically looking for a proper variant caller for the same.

If anybody has knowledge on this or has previously worked on this kind of data, please help me.

Thanks in advance!