u/Straight-War-7905

https://preview.redd.it/xnnfh7v6vuyg1.png?width=1051&format=png&auto=webp&s=5af055bd3820006a181242dc1e7ca635ee0711a2

Is this pipeline correct for deriving DEGs from RNA seq count data using edge R? I am not getting the same DEGs as mentioned in the research paper. What steps significantly change the DEGs? I got only few genes same as the paper,even if I use the counts data from the paper itself.