u/Healthy-Break-4321

workflow of the pipeline

Hi everyone,
I am an early learner of bioinformatics, currently working on my first end-to-end Snakemake pipeline for detecting AMR genes, which I am trying to push into GitHub. Before making it public, I am sharing DAG of my workflow and trying to get some feedback on the logic and structure.
what it does: first, it takes a bacterial WGS sample, download and performs QC, assembles the genome, runs three AMR gene detection tools (rgi, resfinder, arg-annot), and integrates the result.