u/Careless-Lobster5577

Hi, I have bulk RNA seq samples from human saliva with non human sequence reads (so we were aiming for human reads but there are some non human reads) assuming it would be microbial reads, what tools can I use to analyse/identify these reads? some things that takes Fastq files as an input.
A tool that can differentiate virus vs bacteria would be ideal. Thanks!

Hi, I have bulk RNA seq samples from human saliva with non human sequence reads (so we were aiming for human reads but there are some non human reads) assuming it would be microbial reads, what tools can I use to analyse/identify these reads? some things that takes Fastq files as an input.
A tool that can differentiate virus vs bacteria would be ideal. Thanks!